First, I'm not the expert at this but she (Jacee) will see this and respond. In the meantime, let's try to assist her by doing some initial steps she would probably recommend and that way she can be helping you that much quicker.
Do another FULL Malwarebytes scan (after updating malwarebytes to be sure it is current) and then post the report log as an attachment to your next reply.
Then download Hijack This HijackThis - Trend Micro USA
(not the beta but the other free full version), install it, and run it. It will also produce a report which can be saved as a file. Do so and attach that file as well to your next reply.
Do not do a System Restore (especially not to 2009) as that often does not resolve the problem and may complicate things (and if it's that old, cause you a lot of headaches resetting configurations, reloading software, uninstalling old software, updating Vista and any other software that was updated in the meantime, etc. if it even works being that old - we'll deal with getting you able to create restore points again after the virus has been resolved) and don't try anything else at this point as I want the results from the scans to show her the true picture as it exists and not have it changed in the meantime. You can work on documents or check e-mails or surf the web, but download and/or install nothing but Hijack This and don't uninstall anything either for the time being. Also, if you have updates on automatic, change it to manual and do not install any until she has reviewed the situation and gives you the OK to do so (or whatever else she may suggest).
Post as soon as you're finished and await her review and response - it may be hours or a day or two, so be patient. Having her working on your situation is worth the wait.